Package: meteR 1.2

meteR: Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)

Fit and plot macroecological patterns predicted by the Maximum Entropy Theory of Ecology (METE).

Authors:Andy Rominger, Cory Merow

meteR_1.2.tar.gz
meteR_1.2.zip(r-4.7-x86_64)meteR_1.2.zip(r-4.7-arm64)meteR_1.2.zip(r-4.6-x86_64)meteR_1.2.zip(r-4.6-arm64)meteR_1.2.zip(r-4.5-x86_64)
meteR_1.2.tgz(r-4.6-x86_64)meteR_1.2.tgz(r-4.6-arm64)meteR_1.2.tgz(r-4.5-x86_64)meteR_1.2.tgz(r-4.5-arm64)
meteR_1.2.tar.gz(r-4.7-arm64)meteR_1.2.tar.gz(r-4.7-x86_64)meteR_1.2.tar.gz(r-4.6-arm64)meteR_1.2.tar.gz(r-4.6-x86_64)
meteR_1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
meteR/json (API)

# Install 'meteR' in R:

install.packages('meteR', repos = c('https://cmerow.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cmerow/meter/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

anbo - Community abundance data for a desert grassland
arth - Arthropod community abundance data

On CRAN:

cpp

5.48 score 12 stars 50 scripts 304 downloads 1 mentions 23 exports 6 dependencies

Last updated from:d459165539. Checks:13 ERROR, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	ERROR	102
linux-devel-x86_64	ERROR	133
source / vignettes	OK	184
linux-release-arm64	ERROR	97
linux-release-x86_64	ERROR	127
macos-release-arm64	ERROR	162
macos-release-x86_64	ERROR	307
macos-oldrel-arm64	ERROR	147
macos-oldrel-x86_64	ERROR	316
windows-devel-arm64	ERROR	330
windows-devel-x86_64	ERROR	159
windows-release-arm64	ERROR	318
windows-release-x86_64	ERROR	85
windows-oldrel-x86_64	ERROR	105
wasm-release	OK	103

Exports:downscaleSAR ebar empiricalSAR gsneESF ipd logLikZ meteDist2Rank meteESF meteNu metePhi metePi metePsi meteSAR meteSSF meteTheta mse mseZ predictESF sad sipd spd ssad upscaleSAR

Dependencies:distr MASS nleqslv Rcpp sfsmisc startupmsg

An Overview of meteR: testing the Maximum Entropy Theory of Ecology

Species Abundance Distribution (SAD) | Individual Power Distribution (IPD) | Case Study 3 - Specifying the state variables | References

Rendered frommeteR_vignette.Rmdusingknitr::rmarkdown

Last update: 2016-06-20
Started: 2014-11-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Analyses with the Maximum Entropy Theory of Ecology (METE)	meteR-package meteR
Community abundance data for a desert grassland (anza borrego)	anbo
Arthropod community abundance data	arth
Downscale the species area relationship (SAR) or endemics area relationship (EAR)	downscaleSAR
Relationship between mean metabolic rate (\bar{epsilon}) and abundance	ebar
Empirical SAR or EAR	empiricalSAR
gsneESF	gsneESF
Individual Power Distribution	ipd ipd.meteESF
Compute log-likelihood of a meteDist object	logLik.meteDist
Compute log-likelihood z-score	logLikZ logLikZ.meteDist
meteDist2Rank	meteDist2Rank
meteESF	meteESF
Equation of the PMF for the METE species metabolic rate distribution	meteNu
Equation of the METE species abundance distribution	metePhi
Equation of the PMF of the METE spatial species abundance distribution	metePi
Equation of the PMF for the METE individual metabolic rate distribution	metePsi
Compute METE species area relationship (SAR)	meteSAR
meteSSF	meteSSF
Equation of the PMF for the METE Intra-specific metabolic rate distribution	meteTheta
Computes mean squared error for rank or cdf	mse mse.meteDist
Compute z-score of mean squared error	mseZ mseZ.meteDist
Plot the relationship between abundance and metabolic rate, i.e. objects of class damuth	plot.damuth
Plot METE distributions and associated data	plot.meteDist
Plot predicted METE relationships and associated observed relationship seen in data	plot.meteRelat
Plot the species abundance distribution (SAR), i.e. objects of class sar	plot.sar
predictESF	predictESF
print.damuth	print.damuth
Print summaries of 'meteDist' objects	print.meteDist
print.meteESF	print.meteESF
Print summaries of 'meteRelat' objects	print.meteRelat
print.sar	print.sar
Compute residuals between METE predictions and data of a meteDist object	residuals.meteDist
Compute residuals between METE predictions and date of a meteRelat object	residuals.meteRelat
METE species abundance distribution	sad sad.meteESF
Generic method to obtain the species-level individual power distribution (SIPD)	sipd sipd.meteESF
Species Power Distribution	spd spd.meteESF
Species Spatial Abundance Distribution	ssad ssad.meteSSF
upscale SAR	upscaleSAR